Data

Database

Oxytricha Trifallax Genome Maps - Rearrangement maps, chord diagrams, micronuclear arrangements, dot plots for the Trifallax genome.
Assembly Words - This application draws the assembly graph, chord diagram, and circle graph defined by the word.
Assembly Word Properties - Calculates some properties of assembly graph such as the assembly number, assembly polynomial, nesting index, and genus.
Chord Diagram Search - Searches for chord diagrams with various properties
Scrambled patterns - MDS scrambling patterns

Graphs Representing MDS Interaction (Obtained by Denys Kukushkin in 2016)
Components of the MDS Interaction Graphs (Above) (Obtained by Denys Kukushkin in 2016)
Genus Ranges for Chord Diagrams (Obtained by Jonathan Burns in 2014)
Genus Spectrum for Assembly Graphs without Endpoints (Obtained by Ryan Arredondo in 2013)
Genus Spectrum for Assembly Graphs with Endpoints (Obtained by Ryan Arredondo in 2013)
Assembly Graph Words (Obtained by Jonathan Burns in 2010)
Hamiltonian Polygonal Path Counts (Obtained by Jonathan Burns in 2009)

Data D pointersequences - pointer sequences in MAC contigs found by Chen, X. et al.(2014). after filtering.
Connected Quandles and knot colorings - quandles, knot colorings, and inner automorphism groups
12965 knots - knots through 13 crossings for use with the automated deduction system prover9/mace4