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Assembly Words

This application draws the assembly graph, chord diagram, and circle graph defined by the word.

dnagrep

web interface screenshot web interface results screenshot web interface advanced screenshot svg output screenshot terminal output screenshot pdf output screenshot postscript output screenshot
dnagrep is grep-like tool to visualize genome searches and output to various media formats (printable, interactive, and audio).
The image shows a bar with tickmarks showing the results of a dnagrep search.
dnagrep acts as a digital highlighter to aid in visualization of patterns within DNA sequences.
News: August 2014 -- Security enhancements

STAGR

Software To Annotate Genome Rearrangements

Mathematica tools

NestIndex

genus.py

Tool to compute genus range and spectrum of double occurrence words.

Chord Diagram Genus Spectrum

Calculates the chord diagram genus spectrum using javascript.

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