News & Events
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- February 01, 2018 - February 02, 2018:
Dr. Chad Giusti visited the research group from Delaware.
- December 01, 2017:
Brad and Kyle attended the MAA Suncoast Regional Meeting.
- November 15, 2017:
Dr. Margherita Maria Ferrari joined the research group.
- November 13, 2017 - November 17, 2017:
Dr. Ian McQuillan visited the research group from Canada.
- October 09, 2017 - October 13, 2017:
Dr. Bei Wang visited the research group from Utah.
- October 02, 2017 - October 06, 2017:
Abdulmelik Mohammed visited the group from Finland.
- September 24, 2017 - September 28, 2017:
Dr. Jonoska and Dr. (Mustafa) Hajij attended the DNA23 Conference at the University Texas at Austin.
- September 18, 2017 - September 22, 2017:
Dr. Paola Bonizzoni visited the research group from Italy.
- August 30, 2017 - August 30, 2018:
Dr. Ion Petre visited the research group from Finland.
- June 05, 2017 - June 09, 2017:
Dr. Jonoska, Daniel, and Jasper attended UCNC 2017 at the University of Arkansas.
Meetings occur biweekly during the 2018 Spring semester on Mondays and Wednesdays at 10am.
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- February 14, 2018:
Kyle updated the group on what Mustafa and he discussed. He explained how they plan to proceed with JavaPlex and SciPy clustering. Jasper and the group talked about how to handle cases of where MDSs of an interleaving contig overlap with MDSs adjacent to the IES of the corresponding MAC contig. Lina and Margherita provided a proof showing that the product of two graphs is consistently if and only if the two factor graphs are consistently oriented.
- February 12, 2018:
Jasper went over his discrete seminar presentation with the group. He also briefly brought up some of the interleaving data analysis about which Mustafa requested. Margherita and Lina discussed whether consistently oriented simplices could have unions which are not consistently oriented. Kyle reviewed the Python code which Mustafa gave him. Margherita and Brad met to talk about the number of separation vectors which can result from "small" DOWs.
- February 07, 2018:
Lina and Margherita discussed some more definitions related to applying persistent homology on directed graphs, focusing on which complexes could be allowed under different definitions. Kyle explained the forms of sampling which Javaplex utilizes (witness and lazy witness). Mustafa then talked to Kyle and the group about using GUDHI for his topological data analysis and scheduled to meet with him individually.
- February 05, 2018:
The group met with Jonathan (Burns) remotely to discuss the database and some errors Jasper discovered in the php scripts. Kyle is still learning about Javaplex and talked to the group about different automated methods within Javaplex to generate complexes. The group then talked to Brad about some results and avenues he should explore with separation (gap) vectors.
- January 31, 2018:
Jasper discussed a request by Laura's lab to adjust the downloadable file for the MDS annotation of mic contigs on mds_ies_db to reflect the alignment and arrangement of the corresponding mac contig. He also mentioned updates about and exclusions in the G3 manuscript. Daniel gave updates on the manuscript he's developing regarding simulating substitution rules with tile self-assembly. Lina presented a counterexample to the idea that gluing consistently oriented graphs always results in a consistently oriented graph. The group then held a conversation about the notion of dimension and the definition of a boundary operator in regards to Lina's work.